Cambridge Centre for Proteomics
EBI
RpepXML is an R package that allows to import and manipulate pepXML files. Latest source code is available on github and the project's summary page.
The package can be installed using
install.packages("RpepXML",repos="http://R-Forge.R-project.org")
or for by downloading the package from github. Note that it depends on Biobase (a Bioconductor package), XML and plys.
It can then be loaded with
library(RpepXML)
Basic information about the package can be accessed within R with
?RpepXML and
help(package="RpepXML")
and all classes, methods and functions are documented. e.g.
?parseMSMSpepXML or
?"MSMSpepXML-class"
More information about the package and its usage can be found in the vignette
vignette(package="RpepXML","RpepXML")
Lates changes can be found with
news(package="RpepXML")
Do not hesitate to contact me for question, comments or requests.
Laurent Gatto (more about me)
Cambridge Centre for Proteomics
EBI